Skip to content
aicpa-logo-black
  • AICPA Resources:
  • AICPA-CIMA.com
  • Tax Section
  • Store
The Tax Adviser
  • INDIVIDUALS
    • All articles
    • Credits
    • Deductions
    • Income
    • Specialized Issues

    Latest Stories

    • Prop. regs. issued on new qualified tips deduction
    • IRS releases FAQs on qualified overtime pay deduction under H.R. 1
    • IRS to start accepting and processing tax returns on Jan. 26
    • Sec. 30D credit not allowed in 2019 for vehicle purchased in 2013
  • PASSTHROUGHS
    • All articles
    • S Corporations
    • Partnerships & LLCs
    • Contributions, Distributions & Basis
    • Reporting & Filing Requirements

    Latest Stories

    • TEFRA petition filing deadline is jurisdictional
    • Prop. regs. would make permanent safe harbor for furnishing information on Sec. 751 property
    • IRS updates FAQs on business interest limitation, premium tax credit
    • PTEs need more notice of changes, more time to respond, AICPA says
  • CORPORATIONS
    • All articles
    • Deductions
    • Formation & Reorganizations
    • Income
    • Reporting & Filing Requirements

    Latest Stories

    • IRS generally eliminates 5% safe harbor for determining beginning of construction for wind and solar projects
    • Deducting corporate charitable contributions
    • SECURE 2.0 amendment deadline extended for IRAs, other retirement plans
    • Revisiting Sec. 1202: Strategic planning after the 2025 OBBBA expansion
  • ESTATES
    • All articles
    • Estate Tax
    • Gift Tax
    • Tax Computation
    • Types of Trusts

    Latest Stories

    • Estate of McKelvey highlights potential tax pitfalls of variable prepaid forward contracts
    • Recent developments in estate planning
    • Estate tax considerations for non-US persons owning US real estate
  • PROCEDURE
    • All articles
    • Collections & Liens
    • Representations & Examinations
    • Tax Planning & Minimization

    Latest Stories

    • Murrin and Zuch provide insight into the limits of taxpayers’ rights
    • IRS generally eliminates 5% safe harbor for determining beginning of construction for wind and solar projects
    • IRS rules that community trust and affiliated nonprofit corporation can file a single Form 990
    • White House makes recommendations on digital asset transactions
  • Home
  • News
  • Magazine
  • Topics
Advertisement
  1. newsletter
  2. TAX INSIDER
TAX INSIDER

Another alert for IRAs investing in master limited partnerships

Here’s how practitioners should review Forms 990-T received for IRA accounts.

By Janet C. Hagy, CPA
October 8, 2020

Please note: This item is from our archives and was published in 2020. It is provided for historical reference. The content may be out of date and links may no longer function.

Related

January 31, 2026

IRS proposes using NAICS to determine lines of business for certain fringe benefit exclusions

December 31, 2025

Supercharging retirement: Tax benefits and planning opportunities with cash balance plans

December 31, 2025

Revisiting Sec. 1202: Strategic planning after the 2025 OBBBA expansion

TOPICS

  • Personal Financial Planning
    • Retirement Planning
  • Employee Benefits
    • Types & Qualifications

Clients are starting to receive 2019 Forms 990-T, Exempt Organization Business Income Tax Return, with tax due from the sale of publicly traded partnerships (PTPs) owned within individual retirement accounts (IRAs). A Form 990-T is required to be filed when unrelated business taxable income (UBTI) exceeds $1,000 in a year. The IRA fiduciary is responsible for signing and filing the return and paying any tax due, which is usually done by outsourcing the preparation of Form 990-T to an accounting firm without contacting or notifying the IRA owner. (For background on this topic, see “Alert for IRAs Holding Master Limited Partnerships.”)

PTPs are unique as to deducting partnership losses. Unlike with other passive activities, any PTP losses passed through to the partners may only be deducted against income from that specific PTP until the year of sale. Therefore, a loss carryover from year to year can be created. In the year the PTP is sold, the accumulated losses are allowed as a deduction.

Most IRA owners are unaware of the tax implications of owning PTPs within their IRAs. Until about 2015, most fiduciaries did not perform their duty to file Forms 990-T. Many IRA owners did not retain Schedule K-1, Partner’s Share of Income, Deductions, Credits, etc., from the PTPs owned within their IRA, or submit copies to their tax preparer, assuming the income was not taxable until withdrawn.

Now that fiduciaries are taking their return filing obligation seriously and many PTPs are cashing in, the IRA owners are seeing the cost of owning PTPs in their IRA accounts for the first time. In many cases, IRA owners are not being asked for prior year Schedules K-1 before the return is prepared. This results in an overstatement of taxable income in the year of sale if there are unused carryover losses.

The IRA owner typically has very little time to review the Form 990-T before the fiduciary pays the associated tax and no workpapers supporting the tax return are provided. There is no requirement that the IRA owner authorize the withdrawal to the pay the tax. It is quite alarming to get a notice that $(fill in the amount) is going to be deducted from your IRA in 10 days to pay tax on income that was assumed to be deferred.

If your clients have an IRA that invested in PTPs, here is what is needed to help them pay the correct amount of tax.

  1. Obtain all Schedules K-1 for each entity for each year. The important information is the amount of UBTI, or loss, for each year, currently shown in Box 20 Code V. Accumulated unused losses are the most underreported item on Forms 990-T. Many PTPs have merged with other PTP entities over the period of ownership or the client may have sold units in prior years. Therefore, some research may be needed to determine what entities were owned in prior years. The Schedule K-1s for all entities will be needed. If the client does not have or cannot get all the K-1s, the tax preparer for the fiduciary will not adjust the loss carryover.
  2. Obtain year end statements that show sale and basis information for the investments in the IRA account.
  3. The capital gain amount is affected by the debt ratio percentage. Simply put, if the activities of the PTP are debt financed, then a portion of the capital gain is taxable. The debt ratio percentage tells the preparer how much to include. Getting the debt ratio percentage is difficult. It is not published anywhere and can only be obtained from the entity itself. The fiduciary should be able to provide this information.
  4. All Sec. 751 ordinary income is taxable. This ordinary income is part of the overall gain (or loss) from the sale. This amount is provided by the partnership on the K-1.
  5. The tax preparer for the fiduciary is usually reluctant to provide the workpapers. Demand that the fiduciary provide whatever documents and spreadsheets the preparer used. In most cases, this will be just an excel spreadsheet.
  6. Begin now to collect prior and current Schedules K-1 for any PTP holdings within the IRA, even if the client has not sold the interest. Most of the commercial K-1 services, like Tax Package Support, delete Schedules K-1 for the entities they support after three years. Other sources, such as investor relations for the PTP, might have a longer retention period. Advise clients to keep all Schedules K-1 until seven years after the entity is sold.
  7. If the client cannot convince the fiduciary to file a corrected or amended return, consider negotiating a release of liability with the fiduciary and have the client assume responsibility for filing the original or amended Form 990-T.

To their credit, as part of their fiduciary duty, fiduciaries are trying to comply with IRS regulations. However, the amount of tax owed is not their priority. It is up to the IRA owner, with the assistance of their CPA, to protect their investments from erroneous tax assessments.

— Janet C. Hagy, CPA, is a shareholder of Hagy & Associates PC in Austin, Texas, and is also a former member of the AICPA Tax Practice and Procedures Committee. To comment on this article or suggest an idea for another article, contact Sally Schreiber, senior editor, at Sally.Schreiber@aicpa-cima.com.

Advertisement

Latest News

January 31, 2026

Murrin and Zuch provide insight into the limits of taxpayers’ rights

January 31, 2026

IRS generally eliminates 5% safe harbor for determining beginning of construction for wind and solar projects

January 31, 2026

IRS proposes using NAICS to determine lines of business for certain fringe benefit exclusions

January 31, 2026

IRS rules that community trust and affiliated nonprofit corporation can file a single Form 990

January 31, 2026

Prop. regs. issued on new qualified tips deduction

Advertisement

Most Read

Summary of tax rules for liquidating corporations
Practical tax advice for businesses as a result of the OBBBA
Supercharging retirement: Tax benefits and planning opportunities with cash balance plans
The Sec. 645 election to treat a trust as part of the estate
Partnership distributions: Rules and exceptions
Managing tax practices in response to new legislation
Advertisement

TAX PRACTICE MANAGEMENT

Image of happy, sad and neutral smiley faces.

2025 tax software survey

AICPA members in tax practice assess how their return preparation software performed during tax season and offer insights into their procedures.

Tax Clinic

IRS generally eliminates 5% safe harbor for determining beginning of construction for wind and solar projects

IRS proposes using NAICS to determine lines of business for certain fringe benefit exclusions

IRS rules that community trust and affiliated nonprofit corporation can file a single Form 990

Prop. regs. issued on new qualified tips deduction

IRS rules for first time that REIT’s income from markup on electricity from EV charging stations is rents from real property

Magazine

January 2026

January 2026

January 2026
December 2025

December 2025

December 2025
November 2025

November 2025

November 2025
October 2025

October 2025

October 2025
September 2025

September 2025

September 2025
August 2025

August 2025

August 2025
July 2025

July 2025

July 2025
June 2025

June 2025

June 2025
May 2025

May 2025

May 2025
April 2025

April 2025

April 2025
March 2025

March 2025

March 2025
February 2025

February 2025

February 2025
view all

View All

http://view-all

JOIN

AICPA Tax Section

Your go-to source for tax developments and professional insights. Tap into expert guidance, tools, news, and career development.

Connect

  • x-logo The Tax Adviser on X
  • Linkedin AICPA Tax Practitioners on Linkedin

HOME

  • News
  • Monthly issues
  • Tax Insider articles
  • Topics
  • RSS feed rss feed
  • Sitemap

ABOUT

  • About The Tax Adviser
  • Contact us
  • Submit an article
  • Advertise
  • Privacy policy
  • Terms & conditions

JOIN/SUBSCRIBE

  • AICPA Tax Section
  • CPE Express

AICPA & CIMA Sites

  • AICPA-CIMA.com
  • Journal of Accountancy
  • Financial Management (FM)
  • Global Engagement Center
  • Global Career Hub
aicpa-logo-black

© 2026 Association of International Certified Professional Accountants. All rights reserved.